Conformational Mechanics of Polymer Adsorption Transitions at Attractive Substrates

Conformational phases of a semiflexible off-lattice homopolymer model near an attractive substrate are investigated by means of multicanonical computer simulations. In our polymer-substrate model, nonbonded pairs of monomers as well as monomers and the substrate interact via attractive van der Waals forces. To characterize conformational phases of this hybrid system, we analyze thermal fluctuations of energetic and structural quantities, as well as adequate docking parameters. Introducing a solvent parameter related to the strength of the surface attraction, we construct and discuss the solubility-temperature phase diagram. Apart from the main phases of adsorbed and desorbed conformations, we identify several other phase transitions such as the freezing transition between energy-dominated crystalline low-temperature structures and globular entropy-dominated conformations.Comment: 13 pages, 15 figure

Mid-infrared sub-wavelength grating mirror design: tolerance and influence of technological constraints

High polarization selective Si/SiO2 mid-infrared sub-wavelength grating mirrors with large bandwidth adapted to VCSEL integration are compared. These mirrors have been automatically designed for operation at \lambda = 2.3 $\mu$m by an optimization algorithm which maximizes a specially defined quality factor. Several technological constraints in relation with the grating manufacturing process have been imposed within the optimization algorithm and their impact on the optical properties of the mirror have been evaluated. Furthermore, through the tolerance computation of the different dimensions of the structure, the robustness with respect to fabrication errors has been tested. Finally, it appears that the increase of the optical performances of the mirror imposes a less tolerant design with severer technological constraints resulting in a more stringent control of the manufacturing process.Comment: The final publication is available at http://iopscience.iop.org/2040-8986/13/12/125502

Insights into shallow magmatic processes in large silicic magma bodies: the trace element record in the Fish Canyon magma body, Colorado

Highly evolved rhyolite glass plus near-solidus mineral assemblages in voluminous, dacitic, crystal-rich ignimbrites provide an opportunity to evaluate the late magmatic evolution of granodiorite batholiths. This study reports laser-ablation ICP-MS analyses of trace element concentrations in feldspars, hornblende, biotite, titanite, zircon, magnetite, and interstitial glass of the crystal-rich Fish Canyon Tuff. The high-silica rhyolite glass is characterized by relatively high concentrations of feldspar-compatible elements (e.g., 100ppm Sr and 500ppm Ba) and low concentrations of Y (40) compared to many well-studied high-silica rhyolite glasses and whole-rock compositions. Most minerals record some trace element heterogeneities, with, in particular, one large hornblende phenocryst showing four- to six-fold core-to-rim increases in Sr and Ba coupled with a decrease in Sc. The depletions of Y and HREE in the Fish Canyon glass relative to the whole-rock composition (concentrations in glass ~30% of those in whole rocks) reflect late crystallization of phases wherein these elements were compatible. As garnet is not stable at the low-P conditions at which the Fish Canyon magma crystallized, we show that a combination of modally abundant hornblende (~4%) + titanite (~0.5-1%) and the highly polymerized nature of the rhyolitic liquid led to Y and HREE depletions in melt. Relatively high Sr and Ba contents in glass and rimward Sr and Ba increases in euhedral, concentrically zoned hornblende suggest partial feldspar dissolution and a late release of these elements to the melt as hornblende was crystallizing, in agreement with textural evidence for feldspar (and quartz) resorption. Both observations are consistent with thermal rejuvenation of the magma body prior to eruption, during which the proportion of melt increased via feldspar and quartz dissolution, even as hydrous and accessory phases were crystallizing. Sr/Y in Fish Canyon glass (13-18) is lower than the typical "adakitic” value (>40), confirming that high Sr/Y is a reliable indicator of high-pressure magma generation and/or differentiation wherein garnet is implicate

Overdetermined Steady-State Initialization Problems in Object-Oriented Fluid System Models

The formulation of steady-state initialization problems for fluid systems is a non-trivial task. If steady-state equations are specified at the component level, the corresponding system of initial equations at the system level might be overdetermined, if index reduction eliminates some states. On the other hand, steady-state equations are not sufficient to uniquely identify one equilibrium state in the case of closed systems, so additional equations are required. The paper shows how these problems might be solved in an elegant way by formulating overdetermined initialization problems, which have more equations than unknowns and a unique solution, then solving them using a least-squares minimization algorithm. The concept is tested on a representative test case using the OpenModelica compiler

Virus-like particle vaccinology, from bench to bedside.

Virus-like particles (VLPs) have become key tools in biology, medicine and even engineering. After their initial use to resolve viral structures at the atomic level, VLPs were rapidly harnessed to develop antiviral vaccines followed by their use as display platforms to generate any kind of vaccine. Most recently, VLPs have been employed as nanomachines to deliver pharmaceutically active products to specific sites and into specific cells in the body. Here, we focus on the use of VLPs for the development of vaccines with broad fields of indications ranging from classical vaccines against viruses to therapeutic vaccines against chronic inflammation, pain, allergy and cancer. In this review, we take a walk through time, starting with the latest developments in experimental preclinical VLP-based vaccines and ending with marketed vaccines, which earn billions of dollars every year, paving the way for the next wave of prophylactic and therapeutic vaccines already visible on the horizon

Rhyolite generation prior to a Yellowstone supereruption: insights from the Island Park-Mount Jackson rhyolite series

The Yellowstone volcanic field is one of the largest and best-studied centres of rhyolitic volcanism on Earth, yet it still contains little-studied periods of activity. Such an example is the Island Park–Mount Jackson series, which erupted between the Mesa Falls and Lava Creek caldera-forming events as a series of rhyolitic domes and lavas. Here we present the first detailed characterisation of these lavas and use our findings to provide a framework for rhyolite generation in Yellowstone between 1·3 and 0·6 Ma, as well as to assess whether magmatic evolution hints at a forthcoming super-eruption. These porphyritic (15–40% crystals) lavas contain mostly sanidine and quartz with lesser amounts of plagioclase (consistent with equilibrium magmatic modelling via rhyolite-MELTS) and a complex assemblage of mafic minerals. Mineral compositions vary significantly between crystals in each unit, with larger ranges than expected from a single homogeneous population in equilibrium with its host melt. Oxygen isotopes in quartz and sanidine indicate slight depletions (δ18Omagma of 5·0–6·1‰), suggesting some contribution by localised remelting of hydrothermally altered material in the area of the previous Mesa Falls Tuff-related caldera collapse. The preservation of variable O isotopic compositions in quartz requires crystal entrainment less than a few thousand years prior to eruption. Late entrainment of rhyolitic material is supported by the occurrence of subtly older sanidines dated by single-grain 40Ar/39Ar geochronology. The eruption ages of the lavas show discrete clusters illustrating that extended quiescence (>100 kyr) in magmatic activity may be a recurring feature in Yellowstone volcanism. Ubiquitous crystal aggregates, dominated by plagioclase, pyroxene and Fe–Ti oxides, are interpreted as cumulates co-erupted with their extracted liquid. Identical crystal aggregates are found in both normal-δ18O and low-δ18O rocks from Yellowstone, indicating that common petrogenetic processes characterise both volcanic suites, including the late-stage extraction of melt from an incrementally built upper crustal mush zone

On the complexity of IgE: The role of structural flexibility and glycosylation for binding its receptors.

It is well established that immunoglobulin E (IgE) plays a crucial role in atopy by binding to two types of Fcε receptors (FcεRI and FcεRII, also known as CD23). The cross-linking of FcεRI-bound IgE on effector cells, such as basophils and mast cells, initiates the allergic response. Conversely, the binding of IgE to CD23 modulates IgE serum levels and antigen presentation. In addition to binding to FcεRs, IgE can also interact with other receptors, such as certain galectins and, in mice, some FcγRs. The binding strength of IgE to its receptors is affected by its valency and glycosylation. While FcεRI shows reduced binding to IgE immune complexes (IgE-ICs), the binding to CD23 is enhanced. There is no evidence that galectins bind IgE-ICs. On the other hand, IgE glycosylation plays a crucial role in the binding to FcεRI and galectins, whereas the binding to CD23 seems to be independent of glycosylation. In this review, we will focus on receptors that bind to IgE and examine how the glycosylation and complexation of IgE impact their binding

CD8+ T Cells Mediate CD40-independent Maturation of Dendritic Cells In Vivo

Induction of cytotoxic T lymphocyte (CTL) responses against minor histocompatibility antigens is dependent upon the presence of T cell help and requires the interaction of CD40 on dendritic cells (DCs) with CD40 ligand on activated T helper cells (Th). This study demonstrates that CD40 is neither involved in Th-dependent nor Th-independent antiviral CTL responses. Moreover, the data show that DC maturation occurs in vivo after viral infection in the absence of CD40 and Th. This maturation did not require viral infection of  DCs but was mediated by peptide-specific CD8+ T cells. Surprisingly, naive CD8+ T cells were able to trigger DC maturation within 24 h after activation in vivo and in vitro. Moreover, peptide-activated CD8+ T cells were able to induce maturation in trans, as DCs that failed to present the relevant antigen in vivo also underwent maturation. Upon isolation, the in vivo–stimulated DCs were able to convert a classically Th-dependent CTL response (anti-HY) into a Th-independent response in vitro. Thus, antiviral CD8+ T cells are sufficient for the maturation of DCs in the absence of CD40

Light multi-GEM detector for high-resolution tracking systems

Controlled etching of copper electrodes in Gas Electron Multiplier foils allows a reduction of the material budget by more than a factor of two for a triple-GEM detector. Detectors making use of thinned foils provide performances similar to those obtained with standard devices: a gain above 10^4 for a double-GEM, with energy resolution of 27 % fwhm for 5.9 keV X-rays.Comment: Submitted to Nucl.Instr.& Meth.